Nicole Radde: search on Z-Library

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1

Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model

Nadav S Bar, Nicole Radde

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 627 KB

english, 2009

2

The Physics behind Systems Biology

Radde, Nicole E., Hütt, Marc-Thorsten

Journal:

EPJ Nonlinear Biomedical Physics

Year:

2016

Language:

english

File:

PDF, 1.34 MB

english, 2016

3

Modeling of biocatalytic reactions: A workflow for model calibration, selection and validation using Bayesian statistics

Eisenkolb, Ina, Jensch, Antje, Eisenkolb, Kerstin, Kramer, Andrei, Buchholz, Patrick C. F., Pleiss, Jürgen, Spiess, Antje, Radde, Nicole E.

Journal:

Year:

2019

Language:

english

File:

PDF, 5.15 MB

english, 2019

4

Graphical methods for analysing feedback in biological networks – A survey

Radde, Nicole, Bar, Nadav S., Banaji, Murad

Journal:

International Journal of Systems Science

Year:

2010

Language:

english

File:

PDF, 294 KB

english, 2010

5

Inference of an oscillating model for the yeast cell cycle

Nicole Radde, Lars Kaderali

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 1.30 MB

english, 2009

6

Identification of models of heterogeneous cell populations from population snapshot data

Jan Hasenauer, Steffen Waldherr, Malgorzata Doszczak, Nicole Radde, Peter Scheurich, Frank Allgöwer

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.16 MB

english, 2011

7

Convergence of posteriors for structurally non-identified problems using results from the theory of inverse problems

Radde, Nicole E., Offtermatt, Jonas

Journal:

Journal of Inverse and Ill-Posed Problems

Year:

2014

Language:

english

File:

PDF, 568 KB

english, 2014

8

The circuit-breaking algorithm for monotone systems

Thomaseth, Caterina, Kuritz, Karsten, Allgöwer, Frank, Radde, Nicole

Journal:

Mathematical Biosciences

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

9

The tumor suppressor protein DLC1 maintains protein kinase D activity and Golgi secretory function

Jensch, Antje, Frey, Yannick, Bitschar, Katharina, Weber, Patrick, Schmid, Simone, Hausser, Angelika, Olayioye, Monilola A., Radde, Nicole E.

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 2.02 MB

english, 2018

10

Analysis of heterogeneous cell populations: A density-based modeling and identification framework

Jan Hasenauer, Steffen Waldherr, Malgorzata Doszczak, Peter Scheurich, Nicole Radde, Frank Allgöwer

Journal:

Journal of Process Control

Year:

2011

Language:

english

File:

PDF, 522 KB

english, 2011

11

The role of stochastic sequestration dynamics for intrinsic noise filtering in signaling network motifs

Paul, Debdas, Radde, Nicole

Journal:

Journal of Theoretical Biology

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

12

[IEEE 2012 IEEE Symposium on Biological Data Visualization (BioVis) - Seattle, WA, USA (2012.10.14-2012.10.15)] 2012 IEEE Symposium on Biological Data Visualization (BioVis) - Uncertainty-aware visual analysis of biochemical reaction networks

Vehlow, Corinna, Hasenauer, Jan, Kramer, Andrei, Heinrich, Julian, Radde, Nicole, Allgower, Frank, Weiskopf, Daniel

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

13

Robustness and filtering properties of ubiquitous signaling network motifs * *This work has been funded by the German Research Foundation (DFG) as part of the Transregional Collaborative Research Centre (SFB/Transregio) 141 Biological Design and Integrative Structures/project B05.

Paul, Debdas, Radde, Nicole

Journal:

IFAC-PapersOnLine

Year:

2016

Language:

english

File:

PDF, 455 KB

english, 2016

14

Modeling feedback loops in the H-NS-mediated regulation of the Escherichia coli bgl operon

Nicole Radde, Jutta Gebert, Ulrich Faigle, Rainer Schrader, Karin Schnetz

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 294 KB

english, 2008

15

Towards experimental design using a Bayesian framework for parameter identification in dynamic intracellular network models

Andrei Kramer, Nicole Radde

Journal:

Procedia Computer Science

Year:

2010

Language:

english

File:

PDF, 988 KB

english, 2010

16

Modeling sphingomyelin synthase 1 driven reaction at the Golgi apparatus can explain data by inclusion of a positive feedback mechanism

Thomaseth, Caterina, Weber, Patrick, Hamm, Thomas, Kashima, Kenji, Radde, Nicole

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 431 KB

english, 2013

17

Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems

Kramer, Andrei, Calderhead, Ben, Radde, Nicole

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 776 KB

english, 2014

18

Preface

Chappell, Michael J., Dickson, Jennifer, Radde, Nicole, Chase, J. Geoffrey

Journal:

Mathematical Biosciences

Year:

2017

Language:

english

File:

PDF, 236 KB

english, 2017

19

Impact of measurement noise, experimental design, and estimation methods on Modular Response Analysis based network reconstruction

Thomaseth, Caterina, Fey, Dirk, Santra, Tapesh, Rukhlenko, Oleksii S., Radde, Nicole E., Kholodenko, Boris N.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.61 MB

english, 2018

20

Determinants of robustness in spindle assembly checkpoint signalling

Heinrich, Stephanie, Geissen, Eva-Maria, Kamenz, Julia, Trautmann, Susanne, Widmer, Christian, Drewe, Philipp, Knop, Michael, Radde, Nicole, Hasenauer, Jan, Hauf, Silke

Journal:

Nature Cell Biology

Year:

2013

Language:

english

File:

PDF, 8.27 MB

english, 2013

21

The effect of model rescaling and normalization on sensitivity analysis on an example of a MAPK pathway model

Kirch, Jakob, Thomaseth, Caterina, Jensch, Antje, Radde, Nicole E.

Journal:

EPJ Nonlinear Biomedical Physics

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

22

Modelling of lung-metastases apoptosis within brain tissue

Schröder, Patrick, Wagner, Arndt, Stöhr, Daniela, Rehm, Markus, Jensch, Antje, Radde, Nicole, Ehlers, Wolfgang

Journal:

Year:

2018

Language:

english

File:

PDF, 362 KB

english, 2018

23

DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation

Adam, Sabrina, Anteneh, Hiwot, Hornisch, Maximilian, Wagner, Vincent, Lu, Jiuwei, Radde, Nicole E., Bashtrykov, Pavel, Song, Jikui, Jeltsch, Albert

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.34 MB

2020

24

[IEEE Control (MSC) - Yokohama, Japan (2010.09.8-2010.09.10)] 2010 IEEE International Conference on Control Applications - Generic bifurcations in the dynamics of biochemical networks

Waldherr, Steffen, Allgower, Frank, Radde, Nicole

Year:

2010

Language:

english

File:

PDF, 484 KB

english, 2010

25

A computational model of PKD and CERT interactions at the trans-Golgi network of mammalian cells

Weber, Patrick, Hornjik, Mariana, Olayioye, Monilola A, Hausser, Angelika, Radde, Nicole E

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

26

The role of feedback mechanisms in biological network models—A tutorial

Journal:

Asian Journal of Control

Year:

2011

Language:

english

File:

PDF, 269 KB

english, 2011

27

Bifurcation Analysis for Intracellular Regulation Networks Based on Their Circuit Structure

Radde, Nicole E., Klaus, Sonny

Journal:

IFAC-PapersOnLine

Year:

2015

Language:

english

File:

PDF, 662 KB

english, 2015

28

Sampling-based Bayesian approaches reveal the importance of quasi-bistable behavior in cellular decision processes on the example of the MAPK signaling pathway in PC-12 cell lines

Antje Jensch,Caterina Thomaseth,Nicole E. Radde

Journal:

BMC Systems Biology

Year:

2017

Language:

english

File:

PDF, 2.56 MB

english, 2017

29

Modeling and simulation of nitrogen regulation in Corynebacterium glutamicum

Jutta Gebert, Nicole Radde, Ulrich Faigle, Julia Strösser, Andreas Burkovski

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 971 KB

english, 2009

30

The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2008

Language:

english

File:

PDF, 1.15 MB

english, 2008

31

Normalization of Western blot data affects the statistics of estimators * *This work was supported by the German Federal Ministry of Education and Research (BMBF) within the e:Bio-Innovationswettbewerb Systembiologie project PREDICT (grant number FKZ0316186A) and the German Research Foundation (DFG) within the Cluster of Excellence in Simulation Technology (EXC 310/2) at the University of Stuttgart.

Thomaseth, Caterina, Radde, Nicole

Journal:

IFAC-PapersOnLine

Year:

2016

Language:

english

File:

PDF, 483 KB

english, 2016

32

Analyzing fixed points of intracellular regulation networks with interrelated feedback topology

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 655 KB

english, 2012

33

THE EFFECT OF TIME SCALE DIFFERENCES AND TIME DELAYS ON THE STRUCTURAL STABILITY OF OSCILLATIONS IN A TWO-GENE NETWORK

Journal:

Advances in Complex Systems

Year:

2008

Language:

english

File:

PDF, 374 KB

english, 2008

34

Inference of finite mixture models and the effect of binning

Geissen, Eva-Maria, Hasenauer, Jan, Radde, Nicole E.

Journal:

Statistical Applications in Genetics and Molecular Biology

Language:

english

File:

PDF, 1.66 MB

english

35

[IEEE Control (MSC) - Yokohama, Japan (2010.09.8-2010.09.10)] 2010 IEEE International Conference on Control Applications - Computation of the posterior entropy in a Bayesian framework for parameter estimation in biological networks

Kramer, Andrei, Hasenauer, Jan, Allgower, Frank, Radde, Nicole

Year:

2010

Language:

english

File:

PDF, 3.35 MB

english, 2010

36

MEMO: multi-experiment mixture model analysis of censored data

Geissen, Eva-Maria, Hasenauer, Jan, Heinrich, Stephanie, Hauf, Silke, Theis, Fabian J., Radde, Nicole E.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

37

Parameter Estimation and Identifiability of Biological Networks Using Relative Data

Weber, Patrick, Hasenauer, Jan, Allgöwer, Frank, Radde, Nicole

Journal:

IFAC Proceedings Volumes

Year:

2011

Language:

english

File:

PDF, 560 KB

english, 2011

38

AIP Conference Proceedings [AIP COMPUTING ANTICIPATORY SYSTEMS: CASYS ‘09: Ninth International Conference on Computing Anticipatory Systems - Liege, (Belgium) (3–8 August 2009)] - A Statistical Framework for Noise Separation in Dynamic Models of Intracellular Networks

Kramer, Andrei, Radde, Nicole, Dubois, Daniel M.

Year:

2010

Language:

english

File:

PDF, 680 KB

english, 2010

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